IL_7CPU_039

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGG*UGCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_039 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.3569

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

7CPU|1|L5|C|1005
7CPU|1|L5|G|1006
7CPU|1|L5|G|1007
*
7CPU|1|L5|U|1019
7CPU|1|L5|G|1020
7CPU|1|L5|C|1021
7CPU|1|L5|G|1022

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5