IL_7CPU_059
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPU_059 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1681
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
7CPU|1|L5|C|1535
7CPU|1|L5|G|1536
7CPU|1|L5|G|1537
7CPU|1|L5|U|1538
7CPU|1|L5|A|1539
7CPU|1|L5|A|1540
*
7CPU|1|L5|U|1595
7CPU|1|L5|A|1596
7CPU|1|L5|A|1597
7CPU|1|L5|A|1598
7CPU|1|L5|U|1599
7CPU|1|L5|G|1600
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LF
- 60S ribosomal protein L7
- Chain LI
- 60S ribosomal protein L10
- Chain LS
- 60S ribosomal protein L18a
- Chain LT
- 60S ribosomal protein L21
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