IL_7CPU_066

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_066 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.052

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7CPU|1|L5|U|1664
7CPU|1|L5|U|1665
7CPU|1|L5|U|1666
*
7CPU|1|L5|A|1674
7CPU|1|L5|G|1675
7CPU|1|L5|A|1676

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29