IL_7CPU_085

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_085 not in the Motif Atlas

Geometric match to IL_3HHN_004

Geometric discrepancy: 0.1541

The information below is about IL_3HHN_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7CPU|1|L5|G|2313
7CPU|1|L5|G|2314
7CPU|1|L5|C|2315
*
7CPU|1|L5|G|2323
7CPU|1|L5|G|2324
7CPU|1|L5|C|2325

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27