IL_7CPU_089

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7CPU|1|L5|U|2441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_089 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.0937

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

7CPU|1|L5|C|2400
7CPU|1|L5|A|2401
7CPU|1|L5|G|2402
*
7CPU|1|L5|C|2439
7CPU|1|L5|G|2440
7CPU|1|L5|U|2441
7CPU|1|L5|G|2442

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34