IL_7CPU_111

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7CPU|1|L5|A|4038

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_111 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0476

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7CPU|1|L5|G|3573
7CPU|1|L5|A|3574
*
7CPU|1|L5|U|4037
7CPU|1|L5|A|4038
7CPU|1|L5|C|4039
7CPU|1|L5|C|4040

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8