IL_7CPU_115

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_115 not in the Motif Atlas

Homologous match to IL_5TBW_098

Geometric discrepancy: 0.1093

The information below is about IL_5TBW_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7CPU|1|L5|G|3844
7CPU|1|L5|A|3845
*
7CPU|1|L5|U|3855
7CPU|1|L5|A|3856
7CPU|1|L5|C|3857

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a