IL_7CPU_141

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAAG*CUG

Length

8 nucleotides

Bulged bases

7CPU|1|L5|A|4394, 7CPU|1|L5|A|4395

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_141 not in the Motif Atlas

Geometric match to IL_2W2H_002

Geometric discrepancy: 0.3813

The information below is about IL_2W2H_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_19557.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7CPU|1|L5|C|4392
7CPU|1|L5|G|4393
7CPU|1|L5|A|4394
7CPU|1|L5|A|4395
7CPU|1|L5|G|4396
*
7CPU|1|L5|C|4606
7CPU|1|L5|U|4607
7CPU|1|L5|G|4608

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains