IL_7CPU_181

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7CPU|1|S2|U|369, 7CPU|1|S2|C|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_181 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.364

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45649.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7CPU|1|S2|U|367
7CPU|1|S2|U|368
7CPU|1|S2|U|369
7CPU|1|S2|C|370
7CPU|1|S2|G|371
7CPU|1|S2|A|372
*
7CPU|1|S2|U|394
7CPU|1|S2|G|395

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11