Loop IL_7CPU

3D structure

PDB id: 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of 80S ribosome from mouse kidney
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å

Loop

Sequence: UAUAGACAGCAGGACG*CCGCUAAGGAGUGUGUAACAACUCACCUGCCGAA
Length: 50 nucleotides
Bulged bases: 7CPU|1|L5|A|1763, 7CPU|1|L5|C|1797, 7CPU|1|L5|G|1798, 7CPU|1|L5|C|1799, 7CPU|1|L5|U|1800, 7CPU|1|L5|G|1810, 7CPU|1|L5|U|1811, 7CPU|1|L5|A|1812, 7CPU|1|L5|A|1813, 7CPU|1|L5|C|1814, 7CPU|1|L5|A|1815, 7CPU|1|L5|U|1823
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7CPU|1|L5|U|1760
7CPU|1|L5|A|1761
7CPU|1|L5|U|1762
7CPU|1|L5|A|1763
7CPU|1|L5|G|1764
7CPU|1|L5|A|1765
7CPU|1|L5|C|1766
7CPU|1|L5|A|1767
7CPU|1|L5|G|1768
7CPU|1|L5|C|1769
7CPU|1|L5|A|1770
7CPU|1|L5|G|1771
7CPU|1|L5|G|1772
7CPU|1|L5|A|1773
7CPU|1|L5|C|1774
7CPU|1|L5|G|1775
*
7CPU|1|L5|C|1796
7CPU|1|L5|C|1797
7CPU|1|L5|G|1798
7CPU|1|L5|C|1799
7CPU|1|L5|U|1800
7CPU|1|L5|A|1801
7CPU|1|L5|A|1802
7CPU|1|L5|G|1803
7CPU|1|L5|G|1804
7CPU|1|L5|A|1805
7CPU|1|L5|G|1806
7CPU|1|L5|U|1807
7CPU|1|L5|G|1808
7CPU|1|L5|U|1809
7CPU|1|L5|G|1810
7CPU|1|L5|U|1811
7CPU|1|L5|A|1812
7CPU|1|L5|A|1813
7CPU|1|L5|C|1814
7CPU|1|L5|A|1815
7CPU|1|L5|A|1816
7CPU|1|L5|C|1817
7CPU|1|L5|U|1818
7CPU|1|L5|C|1819
7CPU|1|L5|A|1820
7CPU|1|L5|C|1821
7CPU|1|L5|C|1822
7CPU|1|L5|U|1823
7CPU|1|L5|G|1824
7CPU|1|L5|C|1825
7CPU|1|L5|C|1826
7CPU|1|L5|G|1827
7CPU|1|L5|A|1828
7CPU|1|L5|A|1829

Current chains

Chain L5: Mus musculus 28S ribosomal RNA

Nearby chains

Chain LS: 60S ribosomal protein L18a
Chain Lm: Ubiquitin-60S ribosomal protein L40

IL_7CPU_250