IL_7CPU_251

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_251 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0587

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7CPU|1|L5|G|2601
7CPU|1|L5|G|2602
7CPU|1|L5|A|2603
7CPU|1|L5|A|2604
7CPU|1|L5|G|2605
7CPU|1|L5|U|2606
7CPU|1|L5|C|2607
7CPU|1|L5|G|2608
7CPU|1|L5|G|2609
*
7CPU|1|L5|C|3494
7CPU|1|L5|U|3495
7CPU|1|L5|G|3496
7CPU|1|L5|U|3497
7CPU|1|L5|C|3498

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23