IL_7CPU_260

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

7CPU|1|S2|U|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_260 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.3535

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7CPU|1|S2|G|926
7CPU|1|S2|A|927
*
7CPU|1|S2|U|1016
7CPU|1|S2|U|1017
7CPU|1|S2|U|1018

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27