IL_7CPV_040

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_040 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2999

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7CPV|1|L5|G|1239
7CPV|1|L5|G|1240
7CPV|1|L5|A|1241
7CPV|1|L5|U|1242
7CPV|1|L5|C|1243
*
7CPV|1|L5|G|1269
7CPV|1|L5|C|1270
7CPV|1|L5|G|1271
7CPV|1|L5|C|1272
7CPV|1|L5|A|1273
7CPV|1|L5|C|1274

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29