IL_7CPV_070

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

7CPV|1|L5|C|1738, 7CPV|1|L5|A|1844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_070 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1589

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7CPV|1|L5|G|1736
7CPV|1|L5|A|1737
7CPV|1|L5|C|1738
7CPV|1|L5|C|1739
7CPV|1|L5|C|1740
7CPV|1|L5|C|1741
7CPV|1|L5|A|1742
7CPV|1|L5|G|1743
7CPV|1|L5|A|1744
7CPV|1|L5|A|1745
7CPV|1|L5|A|1746
7CPV|1|L5|A|1747
*
7CPV|1|L5|U|1841
7CPV|1|L5|G|1842
7CPV|1|L5|A|1843
7CPV|1|L5|A|1844
7CPV|1|L5|A|1845
7CPV|1|L5|A|1846
7CPV|1|L5|U|1847
7CPV|1|L5|G|1848
7CPV|1|L5|G|1849
7CPV|1|L5|A|1850
7CPV|1|L5|U|1851
7CPV|1|L5|G|1852
7CPV|1|L5|G|1853
7CPV|1|L5|C|1854
7CPV|1|L5|G|1855
7CPV|1|L5|C|1856

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10-like

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a

Chain Lm

Ubiquitin-60S ribosomal protein L40