IL_7CPV_075
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 7CPV|1|L5|U|2062
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_075 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.1367
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
7CPV|1|L5|C|2059
7CPV|1|L5|C|2060
7CPV|1|L5|U|2061
7CPV|1|L5|U|2062
7CPV|1|L5|G|2063
7CPV|1|L5|A|2064
7CPV|1|L5|A|2065
7CPV|1|L5|G|2066
*
7CPV|1|L5|U|2086
7CPV|1|L5|G|2087
7CPV|1|L5|G|2088
7CPV|1|L5|A|2089
7CPV|1|L5|G|2090
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
- Chain Le
- 60S ribosomal protein L32
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