IL_7CPV_081

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7CPV|1|L5|G|2303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_081 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2584

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

7CPV|1|L5|G|2299
7CPV|1|L5|A|2300
7CPV|1|L5|G|2301
7CPV|1|L5|U|2302
7CPV|1|L5|G|2303
7CPV|1|L5|G|2304
*
7CPV|1|L5|C|2526
7CPV|1|L5|G|2527
7CPV|1|L5|C|2528

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38