IL_7CPV_093
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 7CPV|1|L5|G|3496
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_093 not in the Motif Atlas
- Geometric match to IL_4V9F_062
- Geometric discrepancy: 0.0922
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
7CPV|1|L5|A|2604
7CPV|1|L5|G|2605
7CPV|1|L5|U|2606
7CPV|1|L5|C|2607
7CPV|1|L5|G|2608
7CPV|1|L5|G|2609
*
7CPV|1|L5|C|3494
7CPV|1|L5|U|3495
7CPV|1|L5|G|3496
7CPV|1|L5|U|3497
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LV
- 60S ribosomal protein L23
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