IL_7CPV_094

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7CPV|1|L5|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_094 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1069

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7CPV|1|L5|C|2621
7CPV|1|L5|G|2622
7CPV|1|L5|U|2623
7CPV|1|L5|A|2624
7CPV|1|L5|A|2625
7CPV|1|L5|C|2626
*
7CPV|1|L5|G|2631
7CPV|1|L5|G|2632
7CPV|1|L5|A|2633
7CPV|1|L5|U|2634
7CPV|1|L5|A|2635
7CPV|1|L5|A|2636
7CPV|1|L5|G|2637

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA