IL_7CPV_098

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7CPV|1|L5|A|3320, 7CPV|1|L5|U|3336, 7CPV|1|L5|C|3340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_098 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.078

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7CPV|1|L5|C|3317
7CPV|1|L5|G|3318
7CPV|1|L5|A|3319
7CPV|1|L5|A|3320
7CPV|1|L5|G|3321
7CPV|1|L5|G|3322
*
7CPV|1|L5|U|3334
7CPV|1|L5|G|3335
7CPV|1|L5|U|3336
7CPV|1|L5|U|3337
7CPV|1|L5|G|3338
7CPV|1|L5|A|3339
7CPV|1|L5|C|3340
7CPV|1|L5|G|3341

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA