IL_7CPV_102

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_102 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1503

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7CPV|1|L5|U|3372
7CPV|1|L5|C|3373
7CPV|1|L5|A|3374
7CPV|1|L5|A|3375
7CPV|1|L5|A|3376
7CPV|1|L5|G|3377
7CPV|1|L5|U|3378
*
7CPV|1|L5|A|3389
7CPV|1|L5|A|3390
7CPV|1|L5|U|3391
7CPV|1|L5|G|3392
7CPV|1|L5|A|3393
7CPV|1|L5|A|3394
7CPV|1|L5|G|3395

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain S6

Transfer RNA; tRNA