IL_7CPV_104
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 7CPV|1|L5|A|3442, 7CPV|1|L5|C|3448, 7CPV|1|L5|C|3467
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_104 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.0865
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7CPV|1|L5|C|3438
7CPV|1|L5|C|3439
7CPV|1|L5|A|3440
7CPV|1|L5|A|3441
7CPV|1|L5|A|3442
7CPV|1|L5|U|3443
7CPV|1|L5|G|3444
7CPV|1|L5|C|3445
7CPV|1|L5|C|3446
7CPV|1|L5|U|3447
7CPV|1|L5|C|3448
7CPV|1|L5|G|3449
*
7CPV|1|L5|C|3465
7CPV|1|L5|G|3466
7CPV|1|L5|C|3467
7CPV|1|L5|G|3468
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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