IL_7CPV_120

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7CPV|1|L5|U|4090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_120 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.0875

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7CPV|1|L5|G|4058
7CPV|1|L5|U|4059
7CPV|1|L5|G|4060
*
7CPV|1|L5|U|4088
7CPV|1|L5|U|4089
7CPV|1|L5|U|4090
7CPV|1|L5|U|4091
7CPV|1|L5|U|4092

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10-like