IL_7CPV_134

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

7CPV|1|L5|U|4287, 7CPV|1|L5|U|4289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_134 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.204

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7CPV|1|L5|U|4285
7CPV|1|L5|G|4286
7CPV|1|L5|U|4287
7CPV|1|L5|A|4288
7CPV|1|L5|U|4289
7CPV|1|L5|G|4290
*
7CPV|1|L5|C|4315
7CPV|1|L5|G|4316
7CPV|1|L5|A|4317
7CPV|1|L5|A|4318
7CPV|1|L5|G|4319

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31