IL_7CPV_137

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7CPV|1|L5|A|4361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_137 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2113

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7CPV|1|L5|G|4333
7CPV|1|L5|A|4334
7CPV|1|L5|U|4335
7CPV|1|L5|U|4336
7CPV|1|L5|A|4337
7CPV|1|L5|U|4338
*
7CPV|1|L5|A|4358
7CPV|1|L5|G|4359
7CPV|1|L5|A|4360
7CPV|1|L5|A|4361
7CPV|1|L5|U|4362
7CPV|1|L5|C|4363

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40