IL_7CPV_140

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_140 not in the Motif Atlas

Geometric match to IL_3BNR_012

Geometric discrepancy: 0.1396

The information below is about IL_3BNR_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

7CPV|1|L5|C|4401
7CPV|1|L5|U|4402
7CPV|1|L5|C|4403
*
7CPV|1|L5|G|4599
7CPV|1|L5|U|4600
7CPV|1|L5|G|4601

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Lf

60S ribosomal protein L35a