IL_7CPV_197
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- 7CPV|1|S2|C|852
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_197 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.3027
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7CPV|1|S2|G|808
7CPV|1|S2|A|809
7CPV|1|S2|A|810
7CPV|1|S2|A|811
7CPV|1|S2|A|812
7CPV|1|S2|A|813
7CPV|1|S2|A|814
7CPV|1|S2|U|815
7CPV|1|S2|U|816
*
7CPV|1|S2|A|850
7CPV|1|S2|C|851
7CPV|1|S2|C|852
7CPV|1|S2|G|853
7CPV|1|S2|C|854
7CPV|1|S2|A|855
7CPV|1|S2|G|856
7CPV|1|S2|C|857
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SL
- 40S ribosomal protein S11
- Chain SW
- 40S ribosomal protein S15a
Coloring options: