IL_7CPV_201

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

7CPV|1|S2|U|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_201 not in the Motif Atlas

Geometric match to IL_3R1C_011

Geometric discrepancy: 0.2627

The information below is about IL_3R1C_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

7CPV|1|S2|G|926
7CPV|1|S2|A|927
7CPV|1|S2|C|928
*
7CPV|1|S2|G|1015
7CPV|1|S2|U|1016
7CPV|1|S2|U|1017
7CPV|1|S2|U|1018

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27