IL_7CPV_253

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CAUG*CAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_253 not in the Motif Atlas

Geometric match to IL_8VTW_030

Geometric discrepancy: 0.2573

The information below is about IL_8VTW_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_79529.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7CPV|1|S2|C|49
7CPV|1|S2|A|50
7CPV|1|S2|U|51
7CPV|1|S2|G|52
*
7CPV|1|S2|C|476
7CPV|1|S2|A|477
7CPV|1|S2|G|478

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SY

40S ribosomal protein S24