IL_7CPV_256

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_256 not in the Motif Atlas

Homologous match to IL_8P9A_419

Geometric discrepancy: 0.0645

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7CPV|1|S2|G|929
7CPV|1|S2|G|930
7CPV|1|S2|C|931
7CPV|1|S2|C|932
*
7CPV|1|S2|G|1011
7CPV|1|S2|A|1012
7CPV|1|S2|A|1013
7CPV|1|S2|U|1014

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27