IL_7CPV_259

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_259 not in the Motif Atlas

Geometric match to IL_5T83_003

Geometric discrepancy: 0.28

The information below is about IL_5T83_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7CPV|1|L5|A|2234
7CPV|1|L5|C|2235
7CPV|1|L5|G|2236
*
7CPV|1|L5|C|2256
7CPV|1|L5|U|2257

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LX

60S ribosomal protein L23a