IL_7D4I_013
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 7D4I|1|SA|A|468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D4I_013 not in the Motif Atlas
- Geometric match to IL_4V88_386
- Geometric discrepancy: 0.2272
- The information below is about IL_4V88_386
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
7D4I|1|SA|U|37
7D4I|1|SA|C|38
7D4I|1|SA|A|39
7D4I|1|SA|A|40
7D4I|1|SA|A|41
*
7D4I|1|SA|U|466
7D4I|1|SA|G|467
7D4I|1|SA|A|468
7D4I|1|SA|C|469
7D4I|1|SA|A|470
7D4I|1|SA|A|471
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain SF
- 40S ribosomal protein S4-A
- Chain SK
- 40S ribosomal protein S9-A
- Chain SZ
- 40S ribosomal protein S24-A
Coloring options: