IL_7D4I_024

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_024 not in the Motif Atlas

Homologous match to IL_4V88_400

Geometric discrepancy: 0.2738

The information below is about IL_4V88_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7D4I|1|SA|C|270
7D4I|1|SA|A|271
7D4I|1|SA|U|272
7D4I|1|SA|G|273
*
7D4I|1|SA|U|283
7D4I|1|SA|G|284
7D4I|1|SA|G|285

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20

Chain SH

40S ribosomal protein S6-A