IL_7D4I_031

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAU*AAUU

Length

7 nucleotides

Bulged bases

7D4I|1|SA|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_031 not in the Motif Atlas

Geometric match to IL_4V88_476

Geometric discrepancy: 0.3741

The information below is about IL_4V88_476

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

7D4I|1|SA|G|480
7D4I|1|SA|A|481
7D4I|1|SA|U|482
*
7D4I|1|SA|A|505
7D4I|1|SA|A|506
7D4I|1|SA|U|507
7D4I|1|SA|U|508

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5H

Something about silencing protein 10

Chain SK

40S ribosomal protein S9-A