IL_7D4I_032

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_032 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2956

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7D4I|1|SA|G|514
7D4I|1|SA|A|515
7D4I|1|SA|G|516
*
7D4I|1|SA|C|536
7D4I|1|SA|G|537
7D4I|1|SA|A|538
7D4I|1|SA|G|539
7D4I|1|SA|G|540
7D4I|1|SA|A|541
7D4I|1|SA|A|542
7D4I|1|SA|C|543

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5H

Something about silencing protein 10

Chain RJ

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A