IL_7D4I_045

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGAC*GUUUUC

Length

11 nucleotides

Bulged bases

7D4I|1|SA|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_045 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3869

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7D4I|1|SA|G|866
7D4I|1|SA|G|867
7D4I|1|SA|G|868
7D4I|1|SA|A|869
7D4I|1|SA|C|870
*
7D4I|1|SA|G|957
7D4I|1|SA|U|958
7D4I|1|SA|U|959
7D4I|1|SA|U|960
7D4I|1|SA|U|961
7D4I|1|SA|C|962

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RF

Ribosomal RNA-processing protein 7

Chain SO

40S ribosomal protein S13

Chain Sc

40S ribosomal protein S27-A