IL_7D4I_060

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAUU*AGAG

Length

9 nucleotides

Bulged bases

7D4I|1|SA|U|1656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_060 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.2421

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7D4I|1|SA|C|1653
7D4I|1|SA|G|1654
7D4I|1|SA|A|1655
7D4I|1|SA|U|1656
7D4I|1|SA|U|1657
*
7D4I|1|SA|A|1744
7D4I|1|SA|G|1745
7D4I|1|SA|A|1746
7D4I|1|SA|G|1747

Current chains

Chain SA

18S rRNA

Nearby chains

Chain B2

U3 small nucleolar RNA-associated protein 12