IL_7D4I_062

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_062 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.2774

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7D4I|1|SA|U|1669
7D4I|1|SA|G|1670
7D4I|1|SA|A|1671
7D4I|1|SA|G|1672
*
7D4I|1|SA|C|1729
7D4I|1|SA|A|1730
7D4I|1|SA|A|1731
7D4I|1|SA|A|1732

Current chains

Chain SA

18S rRNA

Nearby chains

Chain B3

U3 small nucleolar RNA-associated protein 13

Chain X1

Unassigned peptides 1