IL_7D4I_070

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_070 not in the Motif Atlas

Homologous match to IL_9H3G_240

Geometric discrepancy: 0.4634

The information below is about IL_9H3G_240

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7D4I|1|SA|U|1665
7D4I|1|SA|U|1666
7D4I|1|SA|A|1667
7D4I|1|SA|G|1668
*
7D4I|1|SA|C|1733
7D4I|1|SA|U|1734
7D4I|1|SA|U|1735
7D4I|1|SA|G|1736

Current chains

Chain SA

18S rRNA

Nearby chains

Chain X1

Unassigned peptides 1