IL_7D4I_072

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_072 not in the Motif Atlas

Homologous match to IL_8P9A_464

Geometric discrepancy: 0.5363

The information below is about IL_8P9A_464

Detailed Annotation

Isolated tWW contact

Broad Annotation

Isolated tWW contact

Motif group

IL_55553.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7D4I|1|SA|G|1690
7D4I|1|SA|A|1691
7D4I|1|SA|G|1692
*
7D4I|1|SA|C|1709
7D4I|1|SA|U|1710
7D4I|1|SA|C|1711

Current chains

Chain SA

18S rRNA

Nearby chains