IL_7D5S_006

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAAAUUG*CGC

Length

10 nucleotides

Bulged bases

7D5S|1|3A|U|197, 7D5S|1|3A|U|198

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5S|1|3A|G|115
7D5S|1|3A|A|116
7D5S|1|3A|A|117
7D5S|1|3A|A|118
7D5S|1|3A|U|197
7D5S|1|3A|U|198
7D5S|1|3A|G|199
*
7D5S|1|3A|C|250
7D5S|1|3A|G|251
7D5S|1|3A|C|252

Current chains

Chain 3A

U3 snoRNA

Nearby chains

Chain 3D

Nucleolar protein 56

Chain 3F

Ribosomal RNA-processing protein 9

Chain 3H

13 kDa ribonucleoprotein-associated protein