IL_7D5S_010

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAGA*UAUAC

Length

10 nucleotides

Bulged bases

7D5S|1|5A|A|102, 7D5S|1|5A|A|141

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5S|1|5A|G|100
7D5S|1|5A|G|101
7D5S|1|5A|A|102
7D5S|1|5A|G|103
7D5S|1|5A|A|104
*
7D5S|1|5A|U|140
7D5S|1|5A|A|141
7D5S|1|5A|U|142
7D5S|1|5A|A|143
7D5S|1|5A|C|144

Current chains

Chain 5A

5' ETS

Nearby chains

Chain A5

U3 small nucleolar RNA-associated protein 5

Chain AF

U3 small nucleolar RNA-associated protein 15

Chain AG

NET1-associated nuclear protein 1