IL_7D5S_025

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCGAUA*UGGAACC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5S|1|5A|G|402
7D5S|1|5A|C|403
7D5S|1|5A|G|404
7D5S|1|5A|A|405
7D5S|1|5A|U|406
7D5S|1|5A|A|407
*
7D5S|1|5A|U|449
7D5S|1|5A|G|450
7D5S|1|5A|G|451
7D5S|1|5A|A|452
7D5S|1|5A|A|453
7D5S|1|5A|C|454
7D5S|1|5A|C|455

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain 5F

U3 small nucleolar ribonucleoprotein protein IMP3

Chain 5J

rRNA-processing protein FCF2

Chain RJ

Ribosome biogenesis protein BMS1