IL_7D5S_048
3D structure
- PDB id
- 7D5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 7D5S|1|SA|G|913
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D5S_048 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.1818
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
7D5S|1|SA|U|893
7D5S|1|SA|U|894
7D5S|1|SA|G|895
7D5S|1|SA|U|896
7D5S|1|SA|C|897
7D5S|1|SA|A|898
7D5S|1|SA|G|899
*
7D5S|1|SA|C|910
7D5S|1|SA|U|911
7D5S|1|SA|U|912
7D5S|1|SA|G|913
7D5S|1|SA|G|914
7D5S|1|SA|A|915
7D5S|1|SA|U|916
7D5S|1|SA|U|917
7D5S|1|SA|U|918
7D5S|1|SA|A|919
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain B3
- U3 small nucleolar RNA-associated protein 13
- Chain SP
- 40S ribosomal protein S14-A
Coloring options: