IL_7D5S_049

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D5S_049 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.2819

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7D5S|1|SA|G|985
7D5S|1|SA|G|986
7D5S|1|SA|G|987
7D5S|1|SA|A|988
7D5S|1|SA|U|989
7D5S|1|SA|C|990
*
7D5S|1|SA|G|1014
7D5S|1|SA|U|1015
7D5S|1|SA|C|1016

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RD

rRNA biogenesis protein RRP5