IL_7D5S_056

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CACUG*CGUGCUGGGGAUAUUCAACGAG

Length

27 nucleotides

Bulged bases

7D5S|1|SA|U|1473, 7D5S|1|SA|G|1536

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5S|1|SA|C|1470
7D5S|1|SA|A|1471
7D5S|1|SA|C|1472
7D5S|1|SA|U|1473
7D5S|1|SA|G|1474
*
7D5S|1|SA|C|1533
7D5S|1|SA|G|1534
7D5S|1|SA|U|1535
7D5S|1|SA|G|1536
7D5S|1|SA|C|1537
7D5S|1|SA|U|1538
7D5S|1|SA|G|1539
7D5S|1|SA|G|1540
7D5S|1|SA|G|1541
7D5S|1|SA|G|1542
7D5S|1|SA|A|1543
7D5S|1|SA|U|1544
7D5S|1|SA|A|1545
7D5S|1|SA|U|1566
7D5S|1|SA|U|1567
7D5S|1|SA|C|1568
7D5S|1|SA|A|1569
7D5S|1|SA|A|1570
7D5S|1|SA|C|1571
7D5S|1|SA|G|1572
7D5S|1|SA|A|1573
7D5S|1|SA|G|1574

Current chains

Chain SA

18S rRNA

Nearby chains

Chain AF

U3 small nucleolar RNA-associated protein 15

Chain RH

Ribosomal RNA small subunit methyltransferase NEP1

Chain RN

Nucleolar complex protein 14

Chain SG

40S ribosomal protein S5

Chain ST

40S ribosomal protein S18-A