IL_7D5T_021

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUAUUU*AACUUUUC

Length

14 nucleotides

Bulged bases

7D5T|1|SA|U|260, 7D5T|1|SA|U|261

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5T|1|SA|G|204
7D5T|1|SA|U|205
7D5T|1|SA|A|206
7D5T|1|SA|U|207
7D5T|1|SA|U|208
7D5T|1|SA|U|209
*
7D5T|1|SA|A|256
7D5T|1|SA|A|257
7D5T|1|SA|C|258
7D5T|1|SA|U|259
7D5T|1|SA|U|260
7D5T|1|SA|U|261
7D5T|1|SA|U|262
7D5T|1|SA|C|263

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20

Chain SF

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S6-A

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A