IL_7D5T_028

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D5T_028 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.1262

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

7D5T|1|SA|C|443
7D5T|1|SA|C|444
7D5T|1|SA|A|445
7D5T|1|SA|A|446
7D5T|1|SA|U|447
*
7D5T|1|SA|A|460
7D5T|1|SA|G|461

Current chains

Chain SA

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SZ

40S ribosomal protein S24-A