IL_7D5T_052

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCUG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D5T_052 not in the Motif Atlas

Geometric match to IL_4ZNP_002

Geometric discrepancy: 0.3186

The information below is about IL_4ZNP_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7D5T|1|SA|C|1173
7D5T|1|SA|C|1174
7D5T|1|SA|U|1175
7D5T|1|SA|G|1176
*
7D5T|1|SA|C|1463
7D5T|1|SA|G|1464
7D5T|1|SA|C|1465
7D5T|1|SA|G|1466

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5G

U3 small nucleolar ribonucleoprotein protein IMP4

Chain RJ

Ribosome biogenesis protein BMS1

Chain RN

Nucleolar complex protein 14