IL_7D5T_060

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAGUCCCAUAAC*GCAGUC

Length

18 nucleotides

Bulged bases

7D5T|1|3A|G|87, 7D5T|1|3A|C|90, 7D5T|1|3A|C|91, 7D5T|1|3A|U|93, 7D5T|1|3A|U|324

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5T|1|3A|G|85
7D5T|1|3A|A|86
7D5T|1|3A|G|87
7D5T|1|3A|U|88
7D5T|1|3A|C|89
7D5T|1|3A|C|90
7D5T|1|3A|C|91
7D5T|1|3A|A|92
7D5T|1|3A|U|93
7D5T|1|3A|A|94
7D5T|1|3A|A|95
7D5T|1|3A|C|96
*
7D5T|1|3A|G|320
7D5T|1|3A|C|321
7D5T|1|3A|A|322
7D5T|1|3A|G|323
7D5T|1|3A|U|324
7D5T|1|3A|C|325

Current chains

Chain 3A

U3 snoRNA

Nearby chains

Chain 3B

rRNA 2'-O-methyltransferase fibrillarin

Chain 3C

rRNA 2'-O-methyltransferase fibrillarin

Chain 3E

Nucleolar protein 58

Chain 3G

13 kDa ribonucleoprotein-associated protein

Chain 5J

rRNA-processing protein FCF2