IL_7D63_005

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

GUGAG*CGAUGAUC

Length

13 nucleotides

Bulged bases

7D63|1|3A|U|255

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D63|1|3A|G|111
7D63|1|3A|U|112
7D63|1|3A|G|113
7D63|1|3A|A|114
7D63|1|3A|G|115
*
7D63|1|3A|C|252
7D63|1|3A|G|253
7D63|1|3A|A|254
7D63|1|3A|U|255
7D63|1|3A|G|256
7D63|1|3A|A|257
7D63|1|3A|U|258
7D63|1|3A|C|259

Current chains

Chain 3A

U3 snoRNA

Nearby chains

Chain 3D

Nucleolar protein 56

Chain 3F

Ribosomal RNA-processing protein 9

Chain 3H

13 kDa ribonucleoprotein-associated protein

Chain 5J

rRNA-processing protein FCF2